New Imaging Tool lights up the Brain

Harvard scientists have developed a new tool that could lead the way in brain imaging at a level previously thought impossible.

Professor Jeff William Lichtman, the senior author of the study, took many individual microscope images of the brain and turned them into a 3D image on a computer.

This creates a valuable map of the brain that could ultimately create a valuable resource that other scientists could use.

"Our goal was to develop an automated method for generating detailed information about the interconnections of nerve cells in volumes of brain tissue," commented Lichtman.

The study involved looking at very thinly cut sections of an adult mouse brain. The sections are gathered together on a computer and colour coded.

There are many different types of cells that make up the brain such as nerve cells or blood vessels. These different parts of the brain are given a different colour so that the scientists can identify the different connections of the brain easily.

"The brain is mysterious in part because it has been difficult to describe the intricate details of neural circuits. This work shows all that complexity for the first time in the neocortex - the most advanced part of the brain," says Lichtman.

This study focused on examining the mouse neocortex, the part of the brain that is responsible for all sensory information from mouse whiskers, which aid in orientation and are more sensitive than our own fingertips.

This method has taken two years to develop and produces gigantic amounts of information that needs to be appropriately stored. Just one millimetre cubed of brain volume, generates around two million gigabytes of computer data.

by Rebekah Kells